Evolution and conservation of polycomb repressive complex 1 core components and putative associated factors in the green lineage.
Identifieur interne : 000976 ( Main/Exploration ); précédent : 000975; suivant : 000977Evolution and conservation of polycomb repressive complex 1 core components and putative associated factors in the green lineage.
Auteurs : Yong Huang [République populaire de Chine] ; Ling Jiang [République populaire de Chine] ; Bo-Yu Liu [République populaire de Chine] ; Cheng-Fang Tan [République populaire de Chine] ; Dong-Hong Chen [République populaire de Chine] ; Wen-Hui Shen [République populaire de Chine, France] ; Ying Ruan [République populaire de Chine]Source :
- BMC genomics [ 1471-2164 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- composition chimique : Complexe répresseur Polycomb-1.
- enzymologie : Plantes.
- génétique : Complexe répresseur Polycomb-1, Plantes.
- métabolisme : Complexe répresseur Polycomb-1.
- Domaines protéiques, Séquence conservée, Évolution moléculaire.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Polycomb Repressive Complex 1.
- enzymology : Plants.
- genetics : Plants, Polycomb Repressive Complex 1.
- chemical , metabolism : Polycomb Repressive Complex 1.
- Conserved Sequence, Evolution, Molecular, Protein Domains.
Abstract
BACKGROUND
Polycomb group (PcG) proteins play important roles in animal and plant development and stress response. Polycomb repressive complex 1 (PRC1) and PRC2 are the key epigenetic regulators of gene expression, and are involved in almost all developmental stages. PRC1 catalyzes H2A monoubiquitination resulting in transcriptional silencing or activation. The PRC1 components in the green lineage were identified and evolution and conservation was analyzed by bioinformatics techniques. RING Finger Protein 1 (RING1), B lymphoma Mo-MLV insertion region 1 homolog (BMI1), Like Heterochromatin Protein 1 (LHP1) and Embryonic Flower 1 (EMF1) are the PRC1 core components and Vernalization 1 (VRN1), VP1/ABI3-Like 1/2/3 (VAL1/2/3), Alfin-like 1-7 (AL1-7), Inhibitor of growth 1/2 (ING1/2), and Early Bolting in Short Days (EBS) / Short Life (SHL) are the associated factors.
RESULTS
Each PRC1 subunit possesses special domain organizations, such as RING and the ring finger and WD40-associated ubiquitin-like (RAWUL) domains for RING1 and BMI1, chromatin organization modifier (CHROMO) and chromo shadow (ChSh) domains for LHP1, one or two B3 DNA binding domain(s) for VRN1, B3 and zf-CW domains for VAL1/2/3, Alfin and Plant HomeoDomain (PHD) domains for AL1-7, ING and PHD domains for ING1/2, Bromoadjacent homology (BAT) and PHD domains for EBS/SHL. Six new motifs are uncovered in EMF1. The PRC1 core components RING1 and BMI1, and the associated factors VAL1/2/3, AL1-7, ING1/2, and EBS/SHL exist from alga to higher plants, whereas LHP1 only occurs in higher plants. EMF1 and VRN1 are present only in eudicots. PRC1 components undergo duplication in the plant evolution. Most of plants carry the homologous core component LHP1, the associated factor EMF1, and several homologs in RING1, BMI1, VRN1, AL1-7, ING1/2/3, and EBS/SHL. Cabbage, cotton, poplar, orange and maize often exhibit more gene copies than other species. Domain organization analysis shows that duplicated gene functions may be of diverse.
CONCLUSIONS
The PRC1 core components RING1 and BMI1, and the associated factors VAL1/2/3, AL1-7, ING1/2, and EBS/SHL originate from algae. The core component LHP1 is from moss and the associated factors EMF1 and VRN1 are from dicotyledon. PRC1 components are of functional redundancy and diversity in evolution.
DOI: 10.1186/s12864-019-5905-9
PubMed: 31253095
PubMed Central: PMC6599366
Affiliations:
- France, République populaire de Chine
- Alsace (région administrative), Grand Est
- Strasbourg
- Université de Strasbourg
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Le document en format XML
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Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Bo Yu" sort="Liu, Bo Yu" uniqKey="Liu B" first="Bo-Yu" last="Liu">Bo-Yu Liu</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 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410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author><author><name sortKey="Tan, Cheng Fang" sort="Tan, Cheng Fang" uniqKey="Tan C" first="Cheng-Fang" last="Tan">Cheng-Fang Tan</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Dong Hong" sort="Chen, Dong Hong" uniqKey="Chen D" first="Dong-Hong" last="Chen">Dong-Hong Chen</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Subtropical Silviculture, SFGA Engineering Research Center for Dendrobium catenatum (D. officinale), Zhejiang A&F University, Hangzhou, 311300, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Subtropical Silviculture, SFGA Engineering Research Center for Dendrobium catenatum (D. officinale), Zhejiang A&F University, Hangzhou, 311300</wicri:regionArea><wicri:noRegion>311300</wicri:noRegion></affiliation></author><author><name sortKey="Shen, Wen Hui" sort="Shen, Wen Hui" uniqKey="Shen W" first="Wen-Hui" last="Shen">Wen-Hui Shen</name><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Institut de Biologie Mole'culaire des Plantes du CNRS, Universite' de Strasbourg, 12 rue du Ge'ne'ralZimmer, 67084, Strasbourg Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Mole'culaire des Plantes du CNRS, Universite' de Strasbourg, 12 rue du Ge'ne'ralZimmer, 67084, Strasbourg Cedex</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Alsace (région administrative)</region><settlement type="city">Strasbourg</settlement></placeName><orgName type="university">Université de Strasbourg</orgName></affiliation></author><author><name sortKey="Ruan, Ying" sort="Ruan, Ying" uniqKey="Ruan Y" first="Ying" last="Ruan">Ying Ruan</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:31253095</idno><idno type="pmid">31253095</idno><idno type="doi">10.1186/s12864-019-5905-9</idno><idno type="pmc">PMC6599366</idno><idno type="wicri:Area/Main/Corpus">000820</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000820</idno><idno type="wicri:Area/Main/Curation">000820</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000820</idno><idno type="wicri:Area/Main/Exploration">000820</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Evolution and conservation of polycomb repressive complex 1 core components and putative associated factors in the green lineage.</title><author><name sortKey="Huang, Yong" sort="Huang, Yong" uniqKey="Huang Y" first="Yong" last="Huang">Yong Huang</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Ling" sort="Jiang, Ling" uniqKey="Jiang L" first="Ling" last="Jiang">Ling Jiang</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Bo Yu" sort="Liu, Bo Yu" uniqKey="Liu B" first="Bo-Yu" last="Liu">Bo-Yu Liu</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author><author><name sortKey="Tan, Cheng Fang" sort="Tan, Cheng Fang" uniqKey="Tan C" first="Cheng-Fang" last="Tan">Cheng-Fang Tan</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Dong Hong" sort="Chen, Dong Hong" uniqKey="Chen D" first="Dong-Hong" last="Chen">Dong-Hong Chen</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Subtropical Silviculture, SFGA Engineering Research Center for Dendrobium catenatum (D. officinale), Zhejiang A&F University, Hangzhou, 311300, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Subtropical Silviculture, SFGA Engineering Research Center for Dendrobium catenatum (D. officinale), Zhejiang A&F University, Hangzhou, 311300</wicri:regionArea><wicri:noRegion>311300</wicri:noRegion></affiliation></author><author><name sortKey="Shen, Wen Hui" sort="Shen, Wen Hui" uniqKey="Shen W" first="Wen-Hui" last="Shen">Wen-Hui Shen</name><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Institut de Biologie Mole'culaire des Plantes du CNRS, Universite' de Strasbourg, 12 rue du Ge'ne'ralZimmer, 67084, Strasbourg Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Mole'culaire des Plantes du CNRS, Universite' de Strasbourg, 12 rue du Ge'ne'ralZimmer, 67084, Strasbourg Cedex</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Alsace (région administrative)</region><settlement type="city">Strasbourg</settlement></placeName><orgName type="university">Université de Strasbourg</orgName></affiliation></author><author><name sortKey="Ruan, Ying" sort="Ruan, Ying" uniqKey="Ruan Y" first="Ying" last="Ruan">Ying Ruan</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128</wicri:regionArea><wicri:noRegion>410128</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Conserved Sequence (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Plants (enzymology)</term><term>Plants (genetics)</term><term>Polycomb Repressive Complex 1 (chemistry)</term><term>Polycomb Repressive Complex 1 (genetics)</term><term>Polycomb Repressive Complex 1 (metabolism)</term><term>Protein Domains (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Complexe répresseur Polycomb-1 (composition chimique)</term><term>Complexe répresseur Polycomb-1 (génétique)</term><term>Complexe répresseur Polycomb-1 (métabolisme)</term><term>Domaines protéiques (MeSH)</term><term>Plantes (enzymologie)</term><term>Plantes (génétique)</term><term>Séquence conservée (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Polycomb Repressive Complex 1</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Complexe répresseur Polycomb-1</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Plantes</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Plants</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plants</term><term>Polycomb Repressive Complex 1</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Complexe répresseur Polycomb-1</term><term>Plantes</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Polycomb Repressive Complex 1</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Complexe répresseur Polycomb-1</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Conserved Sequence</term><term>Evolution, Molecular</term><term>Protein Domains</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Domaines protéiques</term><term>Séquence conservée</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Polycomb group (PcG) proteins play important roles in animal and plant development and stress response. Polycomb repressive complex 1 (PRC1) and PRC2 are the key epigenetic regulators of gene expression, and are involved in almost all developmental stages. PRC1 catalyzes H2A monoubiquitination resulting in transcriptional silencing or activation. The PRC1 components in the green lineage were identified and evolution and conservation was analyzed by bioinformatics techniques. RING Finger Protein 1 (RING1), B lymphoma Mo-MLV insertion region 1 homolog (BMI1), Like Heterochromatin Protein 1 (LHP1) and Embryonic Flower 1 (EMF1) are the PRC1 core components and Vernalization 1 (VRN1), VP1/ABI3-Like 1/2/3 (VAL1/2/3), Alfin-like 1-7 (AL1-7), Inhibitor of growth 1/2 (ING1/2), and Early Bolting in Short Days (EBS) / Short Life (SHL) are the associated factors.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>Each PRC1 subunit possesses special domain organizations, such as RING and the ring finger and WD40-associated ubiquitin-like (RAWUL) domains for RING1 and BMI1, chromatin organization modifier (CHROMO) and chromo shadow (ChSh) domains for LHP1, one or two B3 DNA binding domain(s) for VRN1, B3 and zf-CW domains for VAL1/2/3, Alfin and Plant HomeoDomain (PHD) domains for AL1-7, ING and PHD domains for ING1/2, Bromoadjacent homology (BAT) and PHD domains for EBS/SHL. Six new motifs are uncovered in EMF1. The PRC1 core components RING1 and BMI1, and the associated factors VAL1/2/3, AL1-7, ING1/2, and EBS/SHL exist from alga to higher plants, whereas LHP1 only occurs in higher plants. EMF1 and VRN1 are present only in eudicots. PRC1 components undergo duplication in the plant evolution. Most of plants carry the homologous core component LHP1, the associated factor EMF1, and several homologs in RING1, BMI1, VRN1, AL1-7, ING1/2/3, and EBS/SHL. Cabbage, cotton, poplar, orange and maize often exhibit more gene copies than other species. Domain organization analysis shows that duplicated gene functions may be of diverse.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>The PRC1 core components RING1 and BMI1, and the associated factors VAL1/2/3, AL1-7, ING1/2, and EBS/SHL originate from algae. The core component LHP1 is from moss and the associated factors EMF1 and VRN1 are from dicotyledon. PRC1 components are of functional redundancy and diversity in evolution.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31253095</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>16</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>16</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>20</Volume><Issue>1</Issue><PubDate><Year>2019</Year><Month>Jun</Month><Day>28</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Evolution and conservation of polycomb repressive complex 1 core components and putative associated factors in the green lineage.</ArticleTitle><Pagination><MedlinePgn>533</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-019-5905-9</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Polycomb group (PcG) proteins play important roles in animal and plant development and stress response. Polycomb repressive complex 1 (PRC1) and PRC2 are the key epigenetic regulators of gene expression, and are involved in almost all developmental stages. PRC1 catalyzes H2A monoubiquitination resulting in transcriptional silencing or activation. The PRC1 components in the green lineage were identified and evolution and conservation was analyzed by bioinformatics techniques. RING Finger Protein 1 (RING1), B lymphoma Mo-MLV insertion region 1 homolog (BMI1), Like Heterochromatin Protein 1 (LHP1) and Embryonic Flower 1 (EMF1) are the PRC1 core components and Vernalization 1 (VRN1), VP1/ABI3-Like 1/2/3 (VAL1/2/3), Alfin-like 1-7 (AL1-7), Inhibitor of growth 1/2 (ING1/2), and Early Bolting in Short Days (EBS) / Short Life (SHL) are the associated factors.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Each PRC1 subunit possesses special domain organizations, such as RING and the ring finger and WD40-associated ubiquitin-like (RAWUL) domains for RING1 and BMI1, chromatin organization modifier (CHROMO) and chromo shadow (ChSh) domains for LHP1, one or two B3 DNA binding domain(s) for VRN1, B3 and zf-CW domains for VAL1/2/3, Alfin and Plant HomeoDomain (PHD) domains for AL1-7, ING and PHD domains for ING1/2, Bromoadjacent homology (BAT) and PHD domains for EBS/SHL. Six new motifs are uncovered in EMF1. The PRC1 core components RING1 and BMI1, and the associated factors VAL1/2/3, AL1-7, ING1/2, and EBS/SHL exist from alga to higher plants, whereas LHP1 only occurs in higher plants. EMF1 and VRN1 are present only in eudicots. PRC1 components undergo duplication in the plant evolution. Most of plants carry the homologous core component LHP1, the associated factor EMF1, and several homologs in RING1, BMI1, VRN1, AL1-7, ING1/2/3, and EBS/SHL. Cabbage, cotton, poplar, orange and maize often exhibit more gene copies than other species. Domain organization analysis shows that duplicated gene functions may be of diverse.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The PRC1 core components RING1 and BMI1, and the associated factors VAL1/2/3, AL1-7, ING1/2, and EBS/SHL originate from algae. The core component LHP1 is from moss and the associated factors EMF1 and VRN1 are from dicotyledon. PRC1 components are of functional redundancy and diversity in evolution.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Ling</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Bo-Yu</ForeName><Initials>BY</Initials><AffiliationInfo><Affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tan</LastName><ForeName>Cheng-Fang</ForeName><Initials>CF</Initials><AffiliationInfo><Affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Dong-Hong</ForeName><Initials>DH</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Subtropical Silviculture, SFGA Engineering Research Center for Dendrobium catenatum (D. officinale), Zhejiang A&F University, Hangzhou, 311300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shen</LastName><ForeName>Wen-Hui</ForeName><Initials>WH</Initials><AffiliationInfo><Affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institut de Biologie Mole'culaire des Plantes du CNRS, Universite' de Strasbourg, 12 rue du Ge'ne'ralZimmer, 67084, Strasbourg Cedex, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ruan</LastName><ForeName>Ying</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory of Crop Epigenetic Regulation and Development in Hunan Province, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>International Associated Laboratory of CNRS-FU-HAU on Plant Epigenome Research, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Plant Genetics and Molecular Biology of Education Department of Hunan Province, Hunan Agricultural University, Changsha, 410128, China. yingruan@hotmail.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>2015</GrantID><Agency>Training Program for Youth Backbone Teacher in University of Hunan</Agency><Country></Country></Grant><Grant><GrantID>2016YFD0100202-8</GrantID><Agency>National Key Research and Development Program of China</Agency><Country></Country></Grant><Grant><GrantID>2019JJ40116</GrantID><Agency>Natural Science Foundation of Hunan Province</Agency><Country></Country></Grant><Grant><GrantID>18K041</GrantID><Agency>Scientific Research Project of Hunan Provincial Education Department</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>06</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>EC 2.3.2.27</RegistryNumber><NameOfSubstance UI="D063150">Polycomb Repressive Complex 1</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017124" MajorTopicYN="Y">Conserved Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010944" MajorTopicYN="N">Plants</DescriptorName><QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D063150" MajorTopicYN="N">Polycomb Repressive Complex 1</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000072417" MajorTopicYN="N">Protein Domains</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Domain organization</Keyword><Keyword MajorTopicYN="N">Evolution</Keyword><Keyword 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uniqKey="Huang Y" first="Yong" last="Huang">Yong Huang</name><name sortKey="Jiang, Ling" sort="Jiang, Ling" uniqKey="Jiang L" first="Ling" last="Jiang">Ling Jiang</name><name sortKey="Jiang, Ling" sort="Jiang, Ling" uniqKey="Jiang L" first="Ling" last="Jiang">Ling Jiang</name><name sortKey="Jiang, Ling" sort="Jiang, Ling" uniqKey="Jiang L" first="Ling" last="Jiang">Ling Jiang</name><name sortKey="Liu, Bo Yu" sort="Liu, Bo Yu" uniqKey="Liu B" first="Bo-Yu" last="Liu">Bo-Yu Liu</name><name sortKey="Liu, Bo Yu" sort="Liu, Bo Yu" uniqKey="Liu B" first="Bo-Yu" last="Liu">Bo-Yu Liu</name><name sortKey="Liu, Bo Yu" sort="Liu, Bo Yu" uniqKey="Liu B" first="Bo-Yu" last="Liu">Bo-Yu Liu</name><name sortKey="Ruan, Ying" sort="Ruan, Ying" uniqKey="Ruan Y" first="Ying" last="Ruan">Ying Ruan</name><name sortKey="Ruan, Ying" sort="Ruan, Ying" uniqKey="Ruan Y" first="Ying" last="Ruan">Ying Ruan</name><name sortKey="Ruan, Ying" sort="Ruan, Ying" uniqKey="Ruan Y" first="Ying" last="Ruan">Ying Ruan</name><name sortKey="Shen, Wen Hui" sort="Shen, Wen Hui" uniqKey="Shen W" first="Wen-Hui" last="Shen">Wen-Hui Shen</name><name sortKey="Tan, Cheng Fang" sort="Tan, Cheng Fang" uniqKey="Tan C" first="Cheng-Fang" last="Tan">Cheng-Fang Tan</name><name sortKey="Tan, Cheng Fang" sort="Tan, Cheng Fang" uniqKey="Tan C" first="Cheng-Fang" last="Tan">Cheng-Fang Tan</name><name sortKey="Tan, Cheng Fang" sort="Tan, Cheng Fang" uniqKey="Tan C" first="Cheng-Fang" last="Tan">Cheng-Fang Tan</name></country><country name="France"><region name="Grand Est"><name sortKey="Shen, Wen Hui" sort="Shen, Wen Hui" uniqKey="Shen W" first="Wen-Hui" last="Shen">Wen-Hui Shen</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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